In a statement on social messaging platform X, the ministry said the targets included caves, shelters, bunkers, depots and natural gas production facilities.
Nine Turkish soldiers were killed in a clash on Friday with members of the outlawed Kurdistan Workers Party (PKK).
Turkish forces have been carrying out a cross-border operation called "Claw-Lock" in Iraq as part of the country's offensive against PKK militants, Reuters reported.
Turkey has also launched military incursions in Syria against the Kurdish YPG militia, regarding it as a wing of the PKK.
The operations were conducted in northern Syria and Metina, Hakurk, Gara, Asos and Qandil regions of northern Iraq at 10 p.m. (1900 GMT), the ministry said.
News Code 159415
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